Blog
Blogging about bioinformatics, machine learning and whatever I find interesting
2024
Dealing with the flood of protein structures
How structure prediction changed the questions we ask and the tools we use Continue reading Dealing with the flood of protein structures
How to accelerate PyTorch on your GPU
A bit of background on GPU acceleration and how to use it with PyTorch Continue reading How to accelerate PyTorch on your GPU
How to represent protein structures in ML
How algorithms such as AlphaFold turn PDB structures into a format that they can process Continue reading How to represent protein structures in ML
How does Pytorch implement a linear layer?
How to find the implementation of a PyTorch operator - A whirlwind tour Continue reading How does Pytorch implement a linear layer?
2023
(GER) Was sind Diffusion Models
Was hinter dem Hype steckt Continue reading (GER) Was sind Diffusion Models
Annoying Errors and how to fix them
Demystifying some of the errors out there for my future self Continue reading Annoying Errors and how to fix them
2022
De novo proteins and where to find them - RosettaCon 2022
About the breathtaking pace of innovation in the space and the amazing community that drives it Continue reading De novo proteins and where to find them - RosettaCon 2022
sed, awk & co - master the shell
How to automate annoying tasks with shell scripts Continue reading sed, awk & co - master the shell
Python for Data Science
How to get started with Python and what tools to use Continue reading Python for Data Science
SSH via VS Code
How to work on remote machines while staying in your editor Continue reading SSH via VS Code
Running R in VS Code
How to setup your VS Code to easily run R and RMarkdown Continue reading Running R in VS Code
Keeping up with the literature - Zotero and Obsidian
A practical guide to set-up Zotero and Obsidian for your perfect Zettelkasten system Continue reading Keeping up with the literature - Zotero and Obsidian
My MacBook setup for coding and research
About the little gritty details that make the difference in my research workflow Continue reading My MacBook setup for coding and research
Protein Geeks of all nations, unite - APFED 2022
About my first in-person conference and how great it is to design proteins Continue reading Protein Geeks of all nations, unite - APFED 2022
(GER) Normalizing Flows Teil 2 - Moderne Normalizing Flows
Hier stellen wir mit modernen Flow-Architekturen wie MAF, IAF und Real-NVP Schriftzüge dar. Continue reading (GER) Normalizing Flows Teil 2 - Moderne Normalizing Flows
(GER) Normalizing Flows Teil 1 - Daten und Determinanten
Was Normalizing Flows sind und wie man sie sich vorstellen kann Continue reading (GER) Normalizing Flows Teil 1 - Daten und Determinanten
Mastering Cloud Computing
Resources for learning cloud computing, from novice to master Continue reading Mastering Cloud Computing
JS vs Python - Destructuring
Destructuring can simplify your code and make it more readable Continue reading JS vs Python - Destructuring
Hello World!
First post on this blog about the scope, my interests and possible topics Continue reading Hello World!
