Blog
Blogging about bioinformatics, machine learning and whatever I find interesting
2024
![Dealing with the flood of protein structures](/assets/img/blog/prot_representation/protein_pile.png)
Dealing with the flood of protein structures
How structure prediction changed the questions we ask and the tools we use Continue reading Dealing with the flood of protein structures
![How to accelerate PyTorch on your GPU](/assets/img/blog/ssh_gpu/gpucluster.jpg)
How to accelerate PyTorch on your GPU
A bit of background on GPU acceleration and how to use it with PyTorch Continue reading How to accelerate PyTorch on your GPU
![How to represent protein structures in ML](/assets/img/blog/prot_representation/protein_bits.png)
How to represent protein structures in ML
How algorithms such as AlphaFold turn PDB structures into a format that they can process Continue reading How to represent protein structures in ML
![How does Pytorch implement a linear layer?](/assets/img/blog/pytorch.jpeg)
How does Pytorch implement a linear layer?
How to find the implementation of a PyTorch operator - A whirlwind tour Continue reading How does Pytorch implement a linear layer?
2023
![(GER) Was sind Diffusion Models](/assets/img/blog/diffusion_models/diffusion_models_cover.jpg)
(GER) Was sind Diffusion Models
Was hinter dem Hype steckt Continue reading (GER) Was sind Diffusion Models
![Annoying Errors and how to fix them](/assets/img/blog/bugfixes/bugfixes.jpeg)
Annoying Errors and how to fix them
Demystifying some of the errors out there for my future self Continue reading Annoying Errors and how to fix them
2022
![De novo proteins and where to find them - RosettaCon 2022](/assets/img/blog/rosetta_logo.png)
De novo proteins and where to find them - RosettaCon 2022
About the breathtaking pace of innovation in the space and the amazing community that drives it Continue reading De novo proteins and where to find them - RosettaCon 2022
![sed, awk & co - master the shell](/assets/img/blog/terminal.png)
sed, awk & co - master the shell
How to automate annoying tasks with shell scripts Continue reading sed, awk & co - master the shell
![Python for Data Science](/assets/img/blog/python_intro/toolbox_front.png)
Python for Data Science
How to get started with Python and what tools to use Continue reading Python for Data Science
![SSH via VS Code](/assets/img/blog/mac_setup/ssh-front.png)
SSH via VS Code
How to work on remote machines while staying in your editor Continue reading SSH via VS Code
![Running R in VS Code](/assets/img/blog/mac_setup/r_vscode.png)
Running R in VS Code
How to setup your VS Code to easily run R and RMarkdown Continue reading Running R in VS Code
![Keeping up with the literature - Zotero and Obsidian](/assets/img/blog/research_papers_pic.jpg)
Keeping up with the literature - Zotero and Obsidian
A practical guide to set-up Zotero and Obsidian for your perfect Zettelkasten system Continue reading Keeping up with the literature - Zotero and Obsidian
![My MacBook setup for coding and research](/assets/img/blog/macbook_pic.jpg)
My MacBook setup for coding and research
About the little gritty details that make the difference in my research workflow Continue reading My MacBook setup for coding and research
![Protein Geeks of all nations, unite - APFED 2022](/assets/img/blog/apfed_logo.png)
Protein Geeks of all nations, unite - APFED 2022
About my first in-person conference and how great it is to design proteins Continue reading Protein Geeks of all nations, unite - APFED 2022
![(GER) Normalizing Flows Teil 2 - Moderne Normalizing Flows](/assets/img/blog/flow_nature.jpg)
(GER) Normalizing Flows Teil 2 - Moderne Normalizing Flows
Hier stellen wir mit modernen Flow-Architekturen wie MAF, IAF und Real-NVP Schriftzüge dar. Continue reading (GER) Normalizing Flows Teil 2 - Moderne Normalizing Flows
![(GER) Normalizing Flows Teil 1 - Daten und Determinanten](/assets/img/blog/flows_chart.png)
(GER) Normalizing Flows Teil 1 - Daten und Determinanten
Was Normalizing Flows sind und wie man sie sich vorstellen kann Continue reading (GER) Normalizing Flows Teil 1 - Daten und Determinanten
![Mastering Cloud Computing](/assets/img/blog/cloud_bits.png)
Mastering Cloud Computing
Resources for learning cloud computing, from novice to master Continue reading Mastering Cloud Computing
![JS vs Python - Destructuring](/assets/img/blog/pythonjs.jpg)
JS vs Python - Destructuring
Destructuring can simplify your code and make it more readable Continue reading JS vs Python - Destructuring
![Hello World!](/assets/img/blog/jj-ying.jpg)
Hello World!
First post on this blog about the scope, my interests and possible topics Continue reading Hello World!