Publications Pre-Prints BioModelsML: Building a FAIR and reproducible collection of machine learning models in life sciences and medicine for easy reuse , Divyang Deep Tiwari, Nils Hoffmann, Kieran Didi , Sumukh Deshpande, Sucheta Ghosh, Tung V. N. Nguyen, Karthik Raman, Henning Hermjakob, Rahuman S Malik Sheriff, biorxviv , 05/2023AbNatiV: VQ-VAE-based assessment of antibody and nanobody nativeness for engineering, selection, and computational design , Aubin Ramon, Alessio Saturnino, Kieran Didi , Matthew Greenig, Pietro Sormanni, biorxviv , 04/2023Book Chapters Generative Models in Bioinformatics , invited book chapter in Encyclopedia of Bioinformatics and Computational Biology, under review, 01/2023The Art of Molecular Programming , textbook, active as editorPeer-reviewed Flexible Small-Molecule Design and Optimization with Equivariant Diffusion Models , Charlie Harris, Kieran Didi , Arne Schneuing, Yuanqi Du, Arian R. Jamasb, Michael Bronstein, Bruno Correia, Pietro Liò, Tom Blundell, ICLR 2023 MLDD workshop , 03/2023Biomolecular condensate phase diagrams with a combinatorial microdroplet platform , William E. Arter, Runzhang Qi, Nadia A. Erkamp, Georg Krainer, Kieran Didi , Timothy J. Welsh, Julia Acker, Jonathan Nixon-Abell, Seema Qamar, Jordina Guillén-Boixet, Titus M. Franzmann, David Kuster, Anthony A. Hyman, Alexander Borodavka, Peter St George-Hyslop, Simon Alberti & Tuomas P. J. Knowles, Nature Communications , 12/2022Conference Presentations Accessible AMR-detection tools for clinicians via cloud-based bioinformatics (oral presentation), Clinical Informatics Symposium Melbourne (Australia), 12/2022sINSIDER: a cloud-native modular platform for kmer-based genomic analysis (oral presentation), ABACBS Conference Melbourne (Australia), 11/2022Moving bioinformatics to the cloud (keynote presentation), eSCAMPS Symposium Cambridge (UK), 09/2022Detecting DNA integration via HPC bioinformatics pipeline (poster),R&I Conference Sydney (Australia), 08/2022Teaching Structural Bioinformatics , lecture, Heidelberg University, 10/2023Advanced Python for Scientists , lecture, Heidelberg University, 06/2023Algorithms II , supervising course on data structures and graph algorithms, Cambridge University, 03-05/2023Algorithms I , Cambridge University, 01-03/2023MLOps with PyTorch Lightning and W&B , conceptualised and lecture workshop, ML Forum CSIRO Australia, 01/2023Python for Scientists , lecture, Heidelberg University, 11/2022Python Best Practices , workshop (co-host), Scientific Software Center Heidelberg, 11/2022Deep Learning with PyTorch , Lunch Time Python workshop, Scientific Software Center Heidelberg, 10/2022Python for Biochemists , lecture, Heidelberg University, 03/2022© 2022. All rights reserved. LICENSE | NOTICE | CHANGELOG